Genetic Diversity and Population Genetic Structure of Tamarix dubia (Tamaricaceae) from Iran | ||
| Plant, Algae, and Environment | ||
| دوره 8، شماره 2، 2024، صفحه 1462-1476 اصل مقاله (926.37 K) | ||
| نوع مقاله: Original Article | ||
| شناسه دیجیتال (DOI): 10.48308/jpr.2024.237130.1089 | ||
| نویسندگان | ||
| Habibollah Ijbari1؛ Jamil Vaezi* 2؛ Hamid Ejtehadi1؛ Maryam Behroozian3 | ||
| 1Quantitative Plant Ecology and Biodiversity Research Lab, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran | ||
| 2Quantitative Plant Ecology and Biodiversity Research Lab, Department of Biology, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, Iran. | ||
| 3Herbarium FUMH, Ferdowsi University of Mashhad, Mashhad, Iran | ||
| چکیده | ||
| The genus Tamarix (Tamaricaceae Link), commonly known as tamarisk, has about 54 to 90 species. This plant is known as a group with high complexity in terms of taxonomy and molecular phylogeny. This genus is one of the complex group of taxa in which multiple evolutionary mechanisms have played role in its evolution. There has been no report on genetic diversity and genetic structure of Tamarix dubia populations. The aim of this study was to illustrate genetic diversity versus genetic differentiation of the species in a geographical context in Iran. In total 112 plants of 23 populations in four geographical regions in Iran were sampled for molecular investigations. We used 100 SRAP loci for genetic analyses of 23 geographical populations. SRAP bands obtained were treated as binary data. Data matrix produced were used for genetic diversity analyses. Polymorphism percentage varied from 16.00% to 30% which indicates a low magnitude of genetic variability. Analysis of molecular variance (AMOVA) test showed significant genetic difference among the populations. Moreover, Fst value was significant for most of the populations indicating that the populations of the species have significant genetic difference. UPGMA dendrogram and MDS plot grouped the samples of each population in a separate cluster representing high intra-population genetic similarity. Heat map constructed based on the SRAP data differentiated the studied trees from each other. In general, the studied populations of T. dubia showed a low magnitude of genetic polymorphism which may be due to low effective population size (Ne), or random genetic drift. | ||
| کلیدواژهها | ||
| Population genetics؛ Population structure؛ geographical regions؛ Polymorphism percentage؛ Tamarix dubia | ||
| مراجع | ||
|
Arianmanesh R, Mehregan I, Assadi M, Nejadsattari T. (2016). Comparative morphology of the genus Tamarix (Tamaricaceae) in Iran. International Letters of Natural Sciences. 60. DOI: 10.18052/www.scipress.com/ILNS.60.1.
Azadi R. (2016). Flora of Iran. Tehran: Research Institute of Forests and Rangelands publication. (in Persian)
Bahramsoltani R, Kalkhorani M, Abbas Zaidi SM, Farzaei MH, Rahimi R. (2020). The genus Tamarix, Traditional uses, phytochemistry, and pharmacology. Journal of Ethnopharmacology. 246: 112245. DOI: 10.1016/j.jep.2019.112245.
Cheng X, Hong X, Khayatnezhad M, Ullah F. (2021). Genetic diversity and comparative study of genomic DNA extraction protocols in Tamarix L. species. Caryologia. 74 (2): 131-139. DOI: 10.36253/caryologia-1056.
Escudero A, Iriondo JM, Torres ME. (2003). Spatial analysis of genetic diversity as a tool for plant conservation. Biological Conservation, 113 (3): 351–365. DOI: 10.1016/S00063207(03)00122-8.
Hammer ØM, Harper DAT, Ryan PD. (2012). PAST, Paleontological Statistics software package for education and data analysis. Palaeontologia Electronica. 4 (1): 1.
Juibary PL, Seyedmehdi FS, Sheidai M, Noormohammadi Z, Koohdar F. (2021). Genetic structure analysis and genetic fingerprinting of sweet orange cultivars (Citrus sinensis (L.) Osbeck) using SCoT molecular markers. Genetic Resources and Crop Evolution. 68: 1645-1654. DOI: 10.1007/s10722-020-01092-2.
Li G and Quiros CF. (2001). Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction, its application to mapping and gene tagging in Brassica. Theoretical and Applied Genetics, 103: 455–461. DOI: 10.1007/s001220100570.
Mayonde S, Cron GV, Glennon KL, Byrne MJ. (2019). Genetic diversity assessment of Tamarix in South Africa – biocontrol and conservation implications, South. South African Journal of Botany. 121,54-62. DOI: 10.1016/j.sajb.2018.10.030.
McCormick MK, Brooks HEA, Whigham DF. (2016). Microsatellite analysis to estimate realized dispersal distance in Phragmites australis. Biological Invasions,18, 2497-2504. DOI: 10.1007/s10530-016-1126-1.
Peakall R and Smouse PE. (2006). GENALEX 6, genetic analysis in Excel Population genetic software for teaching and research. Molecular Ecology Notes. 6,288-295. DOI: 10.1111/j.1471-8286.2005.01155. x.
Podani J. (2000). Introduction to the exploration of multivariate data. Backhuys Publishers, Leiden, Netherlands, 470 pp.
POWO. (2023). Plants of the World Online. Facilitated by the Royal Botanic Gardens, Kew. Published on the Internet. http,//www.plantsoftheworldonline.org/ Retrieved 23 July 2023.
Team RC. RA language and environment for statistical computing, R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051- 07-0.
Sheidai M, Teymoori H, Noormohammadi Z, Mehrabian A.H, Koohdar F, Ghasemzadeh-Baraki S. (2018). Species delimitation in the genus Tamarix, morphological and molecular data. Phytotaxa. 343 (2): 101–115. DOI: 10.11646/phytotaxa.343.2.1.
Sheidai M, Mirshekari R, Koohdar F, Ijbari H, Ghasemzadeh-Barakai S. (2019). Biosystematic study in some Tamarix species in Iran. Genetika. 51 (3): 845-860. DOI: 10.2298/GENSR1903845S.
Sheidai M, Shagholi T, Keshavarzi M, Koohdar F, Ijbari H. (2021). Species delimitation and interspecific gene flow in Tamarix L. (Tamaricaceae). Hacquetia. 18 (2): 313-322. DOI: 10.2478/hacq-2019-0001.
Sheidai M, Zanganeh S, Haji-Ramezanali R, Nouroozi M, Noormohammadi Z, Ghsemzadeh-Baraki S. (2013). Genetic diversity and population structure in four Cirsium (Asteraceae) species. Biologia. 68: 384–397.
Sheidai M and Koohdar F. (2022). Evidence for ancient introgression and gene flow in the genus Tamarix L. (Tamicaceae), A computational approach. Genetic Resources and Crop Evolution. 70: 1653–1661. Doi: 10.1007/s10722-022-01525-0.
Segovia NI, González‑WevR CA, Haye PA. (2020). Signatures of local adaptation in the spatial genetic structure of the ascidian Pyura chilensis along the southeast Pacific coast. Scientific Reports. 10:14098. DOI: 10.1038/s41598-020-70798-1.
Villar JL, Alonso MA. (2016). Tamarix mascatensis. In, Raab-Straube E von, Raus T eds. Euto+Med Checklist Notulae 6. Willdenowia. 46: 423–442.
Weising K, Nybom H, Pfenninger M, Wolf K, Kahl G. (2005). DNA fingerprinting in plants, principles, methods, and applications. CRC Press, Boca Raton.
Yang Q. (2017). Analysis of genetic diversity and construction of fingerprint on Tamarix chinensis from Qinhuangdao by ISSR. Chinese Traditional and Herbal Drugs. (24): 363-367.
Yeh FC and Boyle TJB. (1997). Population genetic analysis of co-dominant and dominant markers and quantitative traits. Belgian Journal of Botany. 129: 157.
Yeh FC. (1999). POPGENE (version 1.3. 1). Microsoft window bases freeware for population genetic analysis.
Yu Y, Harris AJ, Blair C, He XJ. (2015). RASP (Reconstruct Ancestral State in Phylogenies), a tool for historical biogeography. Molecular Phylogenetics and Evolution. 87: 46-49. DOI: 10.1016/j.ympev.2015.03.008.
Zhang XX, Liu BG, Li Y, Liu Y, He YX, Qian ZH, Li JX. (2019). Landscape genetics reveals that adaptive genetic divergence in Pinus bungeana (Pinaceae) is driven by environmental variables relating to ecological habitats. BMC Ecology and Evolution. 19: 160. DOI: https://doi.org/10.1186/s12862-019-1489-x. | ||
|
آمار تعداد مشاهده مقاله: 96 تعداد دریافت فایل اصل مقاله: 149 |
||